read_entry {YAPSA} | R Documentation |
Note: this function uses read.csv
to read vcf-like files
into data frames for single samples. As it uses
read.csv
, the default value for comment.char
is
"" and not "#" as it would have been for read.table
.
read_entry( current_ind, in_list, header = TRUE, in_header = NULL, variant_type = "SNV", delete.char = NULL, ... ) read_list(in_list, in_parallel = FALSE, header = TRUE, in_header = NULL, ...)
current_ind |
Index of the file to read from the list provided below. |
in_list |
List of paths to vcf-like file to be read. The list may be named. |
header |
Boolean whether a header information should be read (as in
|
in_header |
Vector of column names to be substituted if non-NULL. |
variant_type |
Default is "SNV" and provides additional plausibility and checks, omitted if other string |
delete.char |
Character to be deleted, e.g. in order to discriminate between comment lines and header lines, if non-NULL |
... |
Parameters passed on to |
in_parallel |
If multicore functionality is provided on a compute cluster, this option may be set to TRUE in order to enhance speed. |
A vcf-like data frame
A list with entries:
vcf_like_df_list
: List of
the read data frames
readVcf_time
: Object of class
proc_time
, which stores the time needed for reading in the data
NULL NULL