summarizeMolecularProfiles {Xeva}R Documentation

Summarize molecular profiles

Description

This function serves to get molecular profiles from a XevaSet object.

Usage

summarizeMolecularProfiles(object, drug, mDataType, tissue = NULL,
  sensitivity.measure = NULL, unique.model = TRUE, batch = NULL)

Arguments

object

The XevaSet.

drug

Name of the drug.

mDataType

character, where one of the molecular data types is needed.

tissue

Default NULL will return all tissue types.

sensitivity.measure

Default NULL will return all sensitivity measures.

unique.model

Default TRUE will return only one sequncing ID, in the case where one model ID maps to several sequencing IDs.

batch

Name of the batch. Default NULL.

Details

Value

An ExpressionSet where sample names are model.id and sensitivity measures will be presented in pData.

Examples

data(brca)
pacRNA <- summarizeMolecularProfiles(brca, drug="paclitaxel", mDataType="RNASeq",
                                     tissue= "BRCA", sensitivity.measure="mRECIST")
print(pacRNA)

[Package Xeva version 1.8.0 Index]