initiate_canonical_databases {Uniquorn} | R Documentation |
Parses data into r list variable
initiate_canonical_databases( cosmic_file = "CosmicCLP_MutantExport.tsv", ccle_file = "CCLE_hybrid_capture1650_hg19_NoCommonSNPs_CDS_2012.05.07.maf", ref_gen = "GRCH37" )
cosmic_file |
The path to the cosmic DNA genotype data file. Ensure that the right reference genome is used |
ccle_file |
The path to the ccle DNA genotype data file. Ensure that the right reference genome is used |
ref_gen |
Reference genome version |
Returns message if parsing process has succeeded
initiate_canonical_databases( cosmic_file = "CosmicCLP_MutantExport.tsv", ccle_file = "CCLE_hybrid_capture1650_hg19_NoCommonSNPs_CDS_2012.05.07.maf", ref_gen = "GRCH37" )