UNDO-package {UNDO} | R Documentation |
This package contains main function "two_source_deconv" to implement the deconvolution of mixed tumor-stromal expressions in a completely unsupervised way. The prior knowledge of mixing matrix or pure expression is not needed. The package detects marker genes and calculate the mixing matrix and pure expressions automatically.
Package: | UNDO |
Type: | Package |
Version: | 1.7.3 |
Date: | 2014-04-30 |
License: | GPL version 2 or later |
two_source_deconv(ExpressionData,lowper=0.4,highper=0.1,epsilon1=0.01,epsilon2=0.01,A=NULL,S1=NULL,S2=NULL,return=0)
Niya Wang <wangny@vt.edu>
data(NumericalMixMCF7HS27) X <- NumericalMixMCF7HS27 deconvResult <- two_source_deconv(X, lowper = 0.4, highper = 0.1, epsilon1 = 0.1, epsilon2 = 0.1, A = NULL, S1=NULL, S2=NULL, return = 0)