simpleEventType {StructuralVariantAnnotation}R Documentation

Type of simplest explanation of event. Possible types are: | Type | Description | | BND | Single breakend | | CTX | Interchromosomal translocation | | INV | Inversion. | | DUP | Tandem duplication | | INS | Insertion | | DEL | Deletion |

Description

Note that both ++ and – breakpoint will be classified as inversions regardless of whether both breakpoint that consistitute an actual inversion exists or not

Usage

simpleEventType(gr, insertionLengthThreshold = 0.5)

Arguments

gr

breakpoint GRanges object

insertionLengthThreshold

portion of inserted bases compared to total event size to be classified as an insertion. For example, a 5bp deletion with 5 inserted bases will be classified as an INS event.

Value

Type of simplest explanation of event


[Package StructuralVariantAnnotation version 1.8.2 Index]