circleplot {StarBioTrek}R Documentation

Preparation for circle plot

Description

circleplot function takes as input data derived by the function plotcrosstalk and plOt a circle plot.

Usage

circleplot(preplot, scoregene)

Arguments

preplot

a list as obtained from the function plotcrosstalk

scoregene

a score for each gene with values included between -10 e +10

Value

a list with correlation matrix and gene set for each gene

Examples

formatplot<-plotcrosstalk(pathway_plot=pathway[1:6],gs_expre=tumo)
score<-runif(length(formatplot[[2]]), min=-10, max=+10)
circleplot(preplot=formatplot,scoregene=score)

[Package StarBioTrek version 1.18.0 Index]