bubbles-methods {SplicingGraphs} | R Documentation |
bubbles
computes the bubbles of the splicing graph of a given gene
from a SplicingGraphs object.
bubbles(x) ASCODE2DESC
x |
A SplicingGraphs object of length 1. |
TODO
TODO
H. Pagès
This man page is part of the SplicingGraphs package.
Please see ?`SplicingGraphs-package`
for an overview of the
package and for an index of its man pages.
example(SplicingGraphs) # create SplicingGraphs object 'sg' sg ## 'sg' has 1 element per gene and 'names(sg)' gives the gene ids. names(sg) plot(sgraph(sg["geneA"], tx_id.as.edge.label=TRUE)) bubbles(sg["geneA"]) plot(sgraph(sg["geneB"], tx_id.as.edge.label=TRUE)) bubbles(sg["geneB"]) plot(sgraph(sg["geneD"], tx_id.as.edge.label=TRUE)) bubbles(sg["geneD"])