renameReadGroups {SNPhood} | R Documentation |
renameReadGroups
renames a set of read groups from a SNPhood object.
renameReadGroups(SNPhood.o, newReadGroupsMapping, verbose = TRUE)
SNPhood.o |
Object of class |
newReadGroupsMapping |
Named list. Named list. For clarity of mapping, the names of the list must be the currently defined read group names, and the values of each element the corresponding new ones. |
verbose |
Logical(1). Default TRUE. Should the verbose mode (i.e., diagnostic messages during execution of the script) be enabled? |
an object of class SNPhood
with the requested read groups being renamed.
renameBins
, renameDatasets
, renameRegions
data(SNPhood.o, package="SNPhood") mapping = list("a", "b", "c") names(mapping) = annotationReadGroups(SNPhood.o) SNPhood_mod.o = renameReadGroups (SNPhood.o, mapping)