avs.plot2 {RTN}R Documentation

Plot results from AVS methods, multiple plots.

Description

This function takes an AVS object and plots results from the VSE and EVSE methods.

Usage

avs.plot2(object, what="evse", fname=what, width=14, height=2.5, 
width.panels=c(1,3), rmargin=1, at.x=seq(-4,8,2), decreasing=TRUE, 
ylab="Annotation", xlab="Clusters of risk-associated and linked SNPs", 
tfs=NULL)

Arguments

object

an object of class 'AVS' AVS-class.

what

a single character value specifying which analysis should be used. Options: "vse" and "evse".

fname

a character value specifying the name of output file.

height

a numeric value specifying the height of the graphics region in inches.

width

a numeric value specifying the width of the graphics region in inches.

width.panels

a vector of the form c(width1, width2) specifying the proportional width of the 1st and 2nd panels of the plot, respectively.

rmargin

a numeric value specifying the right margin in inches.

at.x

a numeric vector specifying which x-axis tickpoints are to be drawn.

decreasing

a logical value, used to sort by EVSE scores.

ylab

a character value specifying the y-axis label.

xlab

a character value specifying the x-axis label (on the top of the grid image).

tfs

an optional vector with annotation identifiers (e.g. transcription factor).

Value

A plot showing results from the VSE and EVSE methods.

Author(s)

Mauro Castro

Examples


# see 'avs.vse' and 'avs.evse' methods.


[Package RTN version 2.16.0 Index]