probeLookup {RGalaxy} | R Documentation |
Given a space-separated list of Affymetrix probe IDs, return
the PFAM and SYMBOL names. Uses hgu95av2.db
and the
select
method from the AnnotationDbi
package.
probeLookup(probe_ids=GalaxyCharacterParam( required=TRUE, testValues="1002_f_at 1003_s_at"), outputfile=GalaxyOutput("probeLookup", "csv"))
probe_ids |
A space-separated list of Affymetrix probe IDs. |
outputfile |
The name of a .csv file where the returned output is to be written. |
Given one or more Affymetrix probe IDs separated by spaces,
this function will return the PFAM and SYMBOL names associated
with them in human. The function uses the hgu95av2.db
package and the select
function in AnnotationDbi
.
invisible(NULL)
t <- tempfile() probeLookup("1002_f_at 1003_s_at", t) readLines(t)