install.sratoolkit {ORFik}R Documentation

Download sra toolkit

Description

Currently supported for Linux (64 bit centos and ubunutu is tested to work) and Mac-OS(64 bit)

Usage

install.sratoolkit(folder = "~/bin", version = "2.10.9")

Arguments

folder

default folder, "~/bin"

version

a string, default "2.10.9"

Value

path to fastq-dump in sratoolkit

References

https://ncbi.github.io/sra-tools/fastq-dump.html

See Also

Other sra: download.SRA.metadata(), download.SRA(), download.ebi(), rename.SRA.files()

Examples

# install.sratoolkit()
## Custom folder and version
folder <- "/I/WANT/IT/HERE/"
# install.sratoolkit(folder, version = "2.10.7")


[Package ORFik version 1.12.13 Index]