distToTSS {ORFik} | R Documentation |
Matching is done by transcript names. This is applicable practically to any region in Transcript If ORF is not within specified search space in tx, this function will crash.
distToTSS(ORFs, tx)
ORFs |
orfs as |
tx |
transcripts as |
an integer vector, 1 means on TSS, 2 means second base of Tx.
doi: 10.1074/jbc.R116.733899
Other features:
computeFeaturesCage()
,
computeFeatures()
,
countOverlapsW()
,
disengagementScore()
,
distToCds()
,
entropy()
,
floss()
,
fpkm_calc()
,
fpkm()
,
fractionLength()
,
initiationScore()
,
insideOutsideORF()
,
isInFrame()
,
isOverlapping()
,
kozakSequenceScore()
,
orfScore()
,
rankOrder()
,
ribosomeReleaseScore()
,
ribosomeStallingScore()
,
startRegionCoverage()
,
startRegion()
,
stopRegion()
,
subsetCoverage()
,
translationalEff()
grl <- GRangesList(tx1_1 = GRanges("1", IRanges(5, 10), "+")) tx <- GRangesList(tx1 = GRanges("1", IRanges(2, 20), "+")) distToTSS(grl, tx)