txNamesToGeneNames {ORFik} | R Documentation |
Works for ensembl, UCSC and other standard annotations.
txNamesToGeneNames(txNames, txdb)
txNames |
character vector, the transcript names to convert. Can also be a named object with tx names (like a GRangesList), will then extract names. |
txdb |
the transcript database to use or gtf/gff path to it. |
character vector of gene names
gtf <- system.file("extdata", "annotations.gtf", package = "ORFik") txdb <- loadTxdb(gtf) loadRegions(txdb, "cds") # using tx names txNamesToGeneNames(cds, txdb) # Identical to: loadRegions(txdb, "cds", by = "gene")