trim_detection {ORFik}R Documentation

Add trimming info to QC report

Description

Only works if alignment was done using ORFik with STAR.

Usage

trim_detection(df, finals, out.dir)

Arguments

df

an ORFik experiment

finals

a data.table with current output from QCreport

out.dir

optional output directory, default: dirname(df$filepath[1]). Will make a folder called "QC_STATS" with all results in this directory. Warning: If you assign not default path, you will have a hazzle to load files later. Much easier to load count tables, statistics, ++ later with default.

Value

a data.table of the update finals object with trim info


[Package ORFik version 1.12.13 Index]