htx_app {HumanTranscriptomeCompendium} | R Documentation |
explore SRA metadata
htx_app()
a SummarizedExperiment can be requested through an event
This function deals with extraction of compendium elements. The overall scope is determined by HumanTranscriptomeCompendium::studTable which is the list of all studies with taxon 9606, strategy RNA-seq, source transcriptomic. Some studies will not have experiments in the compendium, and if such are selected, a warning will be generated in the session.
if (interactive()) htx_app()