plot_gain_or_loss_barplots {ChromSCape} | R Documentation |
Plot Gain or Loss of cytobands of the most variables cytobands
Plot Gain or Loss of cytobands of the most variables cytobands
plot_gain_or_loss_barplots(scExp, cells = NULL, top = 20) plot_gain_or_loss_barplots(scExp, cells = NULL, top = 20)
scExp |
A SingleCellExperiment with "logRatio_cytoBand" reducedDim slot
filled. See |
cells |
Cell IDs of the tumor samples to |
top |
Number of most variables cytobands to plot |
Plot the gains/lost in the selected cells of interest as multiple barplots
Plot the gains/lost in the selected cells of interest as multiple barplots
data("scExp") scExp = calculate_CNA(scExp, control_samples = unique(scExp$sample_id)[1], ref_genome="hg38", quantiles_to_define_gol = c(0.05,0.95)) plot_gain_or_loss_barplots(scExp, cells = scExp$cell_id[which( scExp$sample_id %in% unique(scExp$sample_id)[2])]) data("scExp") scExp = calculate_CNA(scExp, control_samples = unique(scExp$sample_id)[1], ref_genome="hg38", quantiles_to_define_gol = c(0.05,0.95)) plot_gain_or_loss_barplots(scExp, cells = scExp$cell_id[which( scExp$sample_id %in% unique(scExp$sample_id)[2])])