index_peaks_barcodes_to_matrix_indexes {ChromSCape} | R Documentation |
Read index-peaks-barcodes trio files on interval to create count indexes
index_peaks_barcodes_to_matrix_indexes( feature_file, matrix_file, barcode_file, binarize = FALSE )
feature_file |
A file containing the features genomic locations |
matrix_file |
A file containing the indexes of non-zeroes values and their value (respectively i,j,x,see sparseMatrix) |
barcode_file |
A file containing the barcode ids |
binarize |
Binarize matrix ? |
A list containing a "feature index" data.frame, name_cells, and a region GenomicRange object used to form the sparse matrix