plotBinOverRegions {ChIPpeakAnno} | R Documentation |
plot the output of binOverRegions or binOverGene
plotBinOverRegions(dat, ...)
dat |
A list of matrix which indicate the coverage of regions per bin |
... |
Parameters could be used by matplot |
Jianhong Ou
if(interactive()){ path <- system.file("extdata", package="ChIPpeakAnno") library(TxDb.Hsapiens.UCSC.hg19.knownGene) library(rtracklayer) files <- dir(path, "bigWig") if(.Platform$OS.type != "windows"){ cvglists <- lapply(file.path(path, files), import, format="BigWig", as="RleList") names(cvglists) <- sub(".bigWig", "", files) d <- binOverGene(cvglists, TxDb.Hsapiens.UCSC.hg19.knownGene) plotBinOverRegions(d) } }