GetGeneCellCoordinates {CelliD} | R Documentation |
Get coordinates of both cells and features in a matrix
GetGeneCellCoordinates(X, reduction, dims, features)
X |
Seurat or SingleCellExperiment Object |
reduction |
Which dimensionality reduction to use, must be based on MCA. |
dims |
A vector of integers indicating which dimensions to use with reduction embeddings and loadings for distance calculation. |
features |
Character vector of feature names to subset feature coordinates. If not specified will take all features available from specified reduction Loadings. |
A matrix with gene and cell coordinates of MCA