minFreqFilt {AllelicImbalance} | R Documentation |
filter on minFreqFilt snps
minFreqFilt(x, ...) ## S4 method for signature 'ASEset' minFreqFilt( x, strand = "*", threshold.frequency = 0.1, replace.with = "zero", return.class = "ASEset", sum = "all" )
x |
|
... |
internal param |
strand |
strand to infer from |
threshold.frequency |
least fraction to classify (see details) |
replace.with |
only option 'zero' |
return.class |
'ASEset', 'array' or 'matrix' |
sum |
'each' or 'all' |
Description info here
Jesper R. Gadin, Lasse Folkersen
#load example data data(ASEset) a <- ASEset minFreqFilt(a)