minCountFilt {AllelicImbalance}R Documentation

minCountFilt methods

Description

filter on minCountFilt snps

Usage

minCountFilt(x, ...)

## S4 method for signature 'ASEset'
minCountFilt(
  x,
  strand = "*",
  threshold.counts = 1,
  sum = "all",
  replace.with = "zero",
  return.class = "ASEset"
)

Arguments

x

ASEset object

...

internal param

strand

strand to infer from

threshold.counts

cutoff for read counts (see details)

sum

'each' or 'all'

replace.with

only option 'zero'

return.class

'ASEset', 'array' or 'matrix'

Details

Description info here

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples


#load example data
data(ASEset)
a <- ASEset

minCountFilt(a)


[Package AllelicImbalance version 1.30.0 Index]