defaultMapBias {AllelicImbalance} | R Documentation |
Create mapbias array from genotype matrix requires genotype information
defaultMapBias(x, ...) ## S4 method for signature 'ASEset' defaultMapBias(x, return.class = "array")
x |
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... |
internal arguments |
return.class |
"array" or "ASEset" |
Default mapbias will be 0.5 for bi-allelic snps and 1 for homozygots. For genotypes with NA, 0.5 will be placed on all four alleles. Therefore tri-allelic can not be used atm. Genotype information has to be placed in the genotype(x) assay.
Jesper R. Gadin, Lasse Folkersen
#load example data data(ASEset.sim) fasta <- system.file('extdata/hg19.chr17.subset.fa', package='AllelicImbalance') refAllele(ASEset.sim,fasta=fasta) a <- refAllele(ASEset.sim,fasta=fasta)