metaSeq

DOI: 10.18129/B9.bioc.metaSeq    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see metaSeq.

Meta-analysis of RNA-Seq count data in multiple studies

Bioconductor version: 3.12

The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method

Author: Koki Tsuyuzaki, Itoshi Nikaido

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("metaSeq")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metaSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaSeq")

 

PDF R Script metaSeq
PDF   Reference Manual

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.30.0
In Bioconductor since BioC 2.13 (R-3.0) (7.5 years)
License Artistic-2.0
Depends R (>= 2.13.0), NOISeq, snow, Rcpp
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metaSeq_1.30.0.tar.gz
Windows Binary metaSeq_1.30.0.zip
macOS 10.13 (High Sierra) metaSeq_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/metaSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metaSeq
Package Short Url https://bioconductor.org/packages/metaSeq/
Package Downloads Report Download Stats

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