cleaver

DOI: 10.18129/B9.bioc.cleaver    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see cleaver.

Cleavage of Polypeptide Sequences

Bioconductor version: 3.12

In-silico cleavage of polypeptide sequences. The cleavage rules are taken from: http://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html

Author: Sebastian Gibb [aut, cre]

Maintainer: Sebastian Gibb <mail at sebastiangibb.de>

Citation (from within R, enter citation("cleaver")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cleaver")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cleaver")

 

HTML R Script In-silico cleavage of polypeptides
PDF   Reference Manual
Text   NEWS

Details

biocViews Proteomics, Software
Version 1.28.0
In Bioconductor since BioC 2.13 (R-3.0) (7.5 years)
License GPL (>= 3)
Depends R (>= 3.0.0), methods, Biostrings(>= 1.29.8)
Imports S4Vectors, IRanges
LinkingTo
Suggests testthat (>= 0.8), knitr, BiocStyle(>= 0.0.14), rmarkdown, BRAIN, UniProt.ws(>= 2.1.4)
SystemRequirements
Enhances
URL https://github.com/sgibb/cleaver/
BugReports https://github.com/sgibb/cleaver/issues/
Depends On Me
Imports Me synapter
Suggests Me RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cleaver_1.28.0.tar.gz
Windows Binary cleaver_1.28.0.zip
macOS 10.13 (High Sierra) cleaver_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cleaver
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cleaver
Package Short Url https://bioconductor.org/packages/cleaver/
Package Downloads Report Download Stats

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