annaffy

DOI: 10.18129/B9.bioc.annaffy    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see annaffy.

Annotation tools for Affymetrix biological metadata

Bioconductor version: 3.12

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith <colin at colinsmith.org>

Maintainer: Colin A. Smith <colin at colinsmith.org>

Citation (from within R, enter citation("annaffy")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("annaffy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("annaffy")

 

PDF R Script annaffy Primer
PDF   Reference Manual

Details

biocViews Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting, Software
Version 1.62.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 16 years)
License LGPL
Depends R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db
Imports AnnotationDbi(>= 0.1.15), DBI
LinkingTo
Suggests hgu95av2.db, multtest, tcltk
SystemRequirements
Enhances
URL
Depends On Me PGSEA, webbioc
Imports Me a4Base
Suggests Me AffyExpress, ArrayTools, BiocCaseStudies
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package annaffy_1.62.0.tar.gz
Windows Binary annaffy_1.62.0.zip
macOS 10.13 (High Sierra) annaffy_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/annaffy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/annaffy
Package Short Url https://bioconductor.org/packages/annaffy/
Package Downloads Report Download Stats

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