RDRToolbox

DOI: 10.18129/B9.bioc.RDRToolbox    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see RDRToolbox.

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: 3.12

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>

Citation (from within R, enter citation("RDRToolbox")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RDRToolbox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")

 

PDF R Script A package for nonlinear dimension reduction with Isomap and LLE.
PDF   Reference Manual

Details

biocViews Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization
Version 1.40.0
In Bioconductor since BioC 2.7 (R-2.12) (10.5 years)
License GPL (>= 2)
Depends R (>= 2.9.0)
Imports graphics, grDevices, methods, stats, MASS, rgl
LinkingTo
Suggests golubEsets
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me loon, loon.tourr
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RDRToolbox_1.40.0.tar.gz
Windows Binary RDRToolbox_1.40.0.zip
macOS 10.13 (High Sierra) RDRToolbox_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RDRToolbox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RDRToolbox
Package Short Url https://bioconductor.org/packages/RDRToolbox/
Package Downloads Report Download Stats

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