MSstatsPTM

DOI: 10.18129/B9.bioc.MSstatsPTM    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MSstatsPTM.

Statistical Characterization of Post-translational Modifications

Bioconductor version: 3.12

MSstatsPTM provides general statistical methods for quantitative characterization of post-translational modifications (PTMs). Typically, the analysis involves the quantification of PTM sites (i.e., modified residues) and their corresponding proteins, as well as the integration of the quantification results. MSstatsPTM provides functions for summarization, estimation of PTM site abundance, and detection of changes in PTMs across experimental conditions.

Author: Tsung-Heng Tsai [aut, cre], Olga Vitek [aut]

Maintainer: Tsung-Heng Tsai <tsai.tsungheng at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsPTM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsPTM")

 

HTML	R Script	Introduction to MSstatsPTM
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, MassSpectrometry, Proteomics, Software
Version	1.0.0
In Bioconductor since	BioC 3.12 (R-4.0) (0.5 years)
License	Artistic-2.0
Depends	R (>= 4.0)
Imports	broom, dplyr, rlang, stats, tibble, tidyr, tidyselect, Biostrings
LinkingTo
Suggests	knitr, rmarkdown, testthat (>= 2.1.0), BiocStyle
SystemRequirements
Enhances
URL
BugReports	https://github.com/tsunghengtsai/MSstatsPTM
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MSstatsPTM_1.0.0.tar.gz
Windows Binary	MSstatsPTM_1.0.0.zip
macOS 10.13 (High Sierra)	MSstatsPTM_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MSstatsPTM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MSstatsPTM
Package Short Url	https://bioconductor.org/packages/MSstatsPTM/
Package Downloads Report	Download Stats