GOFunction

DOI: 10.18129/B9.bioc.GOFunction    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GOFunction.

GO-function: deriving biologcially relevant functions from statistically significant functions

Bioconductor version: 3.12

The GO-function package provides a tool to address the redundancy that result from the GO structure or multiple annotation genes and derive biologically relevant functions from the statistically significant functions based on some intuitive assumption and statistical testing.

Author: Jing Wang <jingwang.uestc at gmail.com>

Maintainer: Jing Wang <jingwang.uestc at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GOFunction")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GO, GeneSetEnrichment, Microarray, Pathways, Software
Version	1.38.0
In Bioconductor since	BioC 2.9 (R-2.14) (9.5 years)
License	GPL (>= 2)
Depends	R (>= 2.11.0), methods, Biobase(>= 2.8.0), graph(>= 1.26.0), Rgraphviz(>= 1.26.0), GO.db(>= 2.4.1), AnnotationDbi(>= 1.10.2), SparseM (>= 0.85)
Imports	methods, Biobase, graph, Rgraphviz, GO.db, AnnotationDbi, DBI, SparseM
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/GOFunction
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GOFunction
Package Short Url	https://bioconductor.org/packages/GOFunction/
Package Downloads Report	Download Stats