cnvScoreStouffer {MOMA} | R Documentation |
Integrate CNV scores
cnvScoreStouffer( mapping, diggit.interactions, cytoband = TRUE, from.p = FALSE, pos.nes.only = TRUE )
mapping |
a named vector of genomic locations/cytoband IDs. names are the gene names for each–i.e. a many to one mapping from HUGO or entrez IDs to cytoband location |
diggit.interactions |
list indexed by MR/TF name in Entrez Space each points to a named vector of NES / z-scores associated with entrez IDs for each interacting event. |
cytoband |
Boolean to use cytoband locations for computing final integrated score |
from.p |
Boolean, set TRUE if diggit.interaction values are p-values instead of z-scores |
pos.nes.only |
Boolean, only consider positive DIGGIT association scores when ranking candidate MRs (default=TRUE) |
A vector of z-scores, named by the Master Regulators in 'diggit.interactions'