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| adjust_constraints_to_observed_rates | Adjust the constraint of the model to observed rates |
| aliases_SC | aliases_SC data |
| build_exchange_met | Build the exchange metabolite data.frame |
| coregflux_static | Update the model using the provided gene regulatory network and expression |
| get_biomass_flux_position | Get biomass flux position |
| get_fba_fluxes_from_observations | Get fluxes balance from an observed growth rate |
| get_fva_intervals_from_observations | Get intervals of flux variability (FVA) from an observed growth rate |
| get_linear_model | Train a linear model |
| get_metabolites_exchange_fluxes | Get metabolites exchange fluxes |
| iMM904 | iMM904 |
| ODCurveToFluxCurves | ODCurveToFluxCurves |
| ODCurveToMetabolicGeneCurves | ODCurveToMetabolicGeneCurves |
| ODcurveToMetCurve | ODcurveToMetCurve data |
| ODtoflux | ODtoflux data |
| ODToFluxBounds | ODToFluxBounds |
| PredictedGeneState | PredictedGeneState data |
| predict_linear_model_influence | Predict the gene expression level based on condition-specific influence |
| SC_experiment_influence | SC_experiment_influence data |
| SC_EXP_DATA | SC_EXP_DATA data |
| SC_GRN_1 | SC_GRN_1 data |
| SC_Test_data | SC_Test_data data |
| Simulation | Simulation using Dynamic Flux balance analysis over time as in varma |
| Simulation_Step | Single simulation step |
| update_fluxes_constraints_geneKOOV | Update the fluxes constraints to simulate gene KO or overexpression |
| update_fluxes_constraints_influence | Update the fluxes constraints to simulate TF KO or overexpression |
| update_uptake_fluxes_constraints_metabolites | Update the fluxes constraints given the metabolite concentrations |
| visFluxCurves | Visualize Fluxes Curves |
| visMetabolicGeneCurves | Visualize Metabolic Gene Curves |