greengenes13.5MgDb

DOI: 10.18129/B9.bioc.greengenes13.5MgDb    

Greengenes 13.5 16S rRNA Database Annotation Data

Bioconductor version: Release (3.11)

Metagenome annotation package with for the Greengenes 16S rRNA Database version 13.5. Contains a MgDb-class object, defined in the metagenomeFeatures package.

Author: Nathan D. Olson <nolson at umias.umd.edu>, Joseph Nathaniel Paulson, Hector Corrada-Bravo

Maintainer: Nathan D. Olson <nolson at umiacs.umd.edu>

Citation (from within R, enter citation("greengenes13.5MgDb")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("greengenes13.5MgDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, Microbiome
Version 2.0.0
License Artistic-2.0
Depends R (>= 3.4.0), methods
Imports metagenomeFeatures(>= 1.9.9)
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/HCBravoLab/greengenes13.5MgDb
BugReports https://github.com/HCBravoLab/greengenes13.5MgDb/issues
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package greengenes13.5MgDb_2.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/greengenes13.5MgDb/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: