# 1.2.4 * Added a check in tenxBamqc to check the validity of input chemistry (validCb) # 1.2.1 * Update vignette to show how bamExample is generated # 1.1.6 * Fix countUMI gene_biotype bug # 1.1.5 * Add messages reading GTF file * check gene_biotype column in GTF file before calculating the protein coding genes and counts # 1.1.4 * Removed features arg in .getGeneAnnotation # 1.1.3 * Replaced refGenome package dependency with rtracklayer * Hide Rsubread alignment messages when verbose == FALSE * Removed features arg in .getGeneAnnotation # 1.0.2 * Update bug reports URL. # 0.99.39 * Removed tenxBamqcplot function. Codes merged to qcplots function instead. # 0.99.38 * Add option to plot only filtered cells in tenxBamqcplot # 0.99.37 * Throw error if barcode input is not right # 0.99.36 * Fix a bug where MT reads are not identified. * Add ERCC to rowData of sce object. * Change plot style. Add minor log ticks # 0.99.35 * Add QC visualization functions for 10X BAM files # 0.99.11 * LazyData: true # 0.99.10 * cores = 1 in vigentte # 0.99.9 * Version bump. Add vignette pdf # 0.99.8 * Remove LazyData:true * Add NEWS * Add \dontrun{} to some examples. version bump * Update DESCRIPTION * add data() to internal variables