get_cell_type_proportions {tidybulk} | R Documentation |
Get cell type proportions from cibersort
get_cell_type_proportions( .data, .sample = NULL, .transcript = NULL, .abundance = NULL, reference = X_cibersort, method = "cibersort", ... )
.data |
A tibble |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
reference |
A data frame. The transcript/cell_type data frame of integer transcript abundance |
method |
A character string. The method to be used. At the moment Cibersort (default) and llsr (linear least squares regression) are available. |
... |
Further parameters passed to the function Cibersort |
A tibble including additional columns