keep_variable_transcripts {tidybulk} | R Documentation |
Identify variable genes for dimensionality reduction
keep_variable_transcripts( .data, .sample = NULL, .transcript = NULL, .abundance = NULL, top = 500, log_transform = TRUE )
.data |
A tibble |
.sample |
A character name of the sample column |
.transcript |
A character name of the transcript/gene column |
.abundance |
A character name of the read count column |
top |
An integer. How many top genes to select |
log_transform |
A boolean, whether the value should be log-transformed (e.g., TRUE for RNA sequencing data) |
A tibble filtered genes