aggregate_duplicated_transcripts_bulk {tidybulk}R Documentation

Aggregates multiple counts from the same samples (e.g., from isoforms) This function aggregates counts over samples, concatenates other character columns, and averages other numeric columns

Description

Aggregates multiple counts from the same samples (e.g., from isoforms) This function aggregates counts over samples, concatenates other character columns, and averages other numeric columns

Usage

aggregate_duplicated_transcripts_bulk(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL,
  aggregation_function = sum,
  keep_integer = TRUE
)

Arguments

.data

A tibble

.sample

The name of the sample column

.transcript

The name of the transcript/gene column

.abundance

The name of the transcript/gene abundance column

aggregation_function

A function for counts aggregation (e.g., sum)

keep_integer

A boolean

Value

A tibble with aggregated genes and annotation


[Package tidybulk version 1.0.2 Index]