test_gene_enrichment_bulk_EGSEA {tidybulk} | R Documentation |
Get gene enrichment analyses using EGSEA
test_gene_enrichment_bulk_EGSEA( .data, .formula, .sample = NULL, .entrez, .abundance = NULL, .contrasts = NULL, species, cores = 10 )
.data |
A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> | |
.formula |
A formula with no response variable, representing the desired linear model |
.sample |
The name of the sample column |
.entrez |
The ENTREZ doce of the transcripts/genes |
.abundance |
The name of the transcript/gene abundance column |
.contrasts |
= NULL, |
species |
A character. For example, human or mouse |
cores |
An integer. The number of cores available |
A tibble with edgeR results