ensembl_to_symbol {tidybulk} | R Documentation |
ensembl_to_symbol() takes as imput a 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> | and returns a 'tbl' with the additional transcript symbol column
ensembl_to_symbol(.data, .ensembl, action = "add") ## S4 method for signature 'spec_tbl_df' ensembl_to_symbol(.data, .ensembl, action = "add") ## S4 method for signature 'tbl_df' ensembl_to_symbol(.data, .ensembl, action = "add") ## S4 method for signature 'tidybulk' ensembl_to_symbol(.data, .ensembl, action = "add")
.data |
A 'tbl' formatted as | <SAMPLE> | <ENSEMBL_ID> | <COUNT> | <...> | |
.ensembl |
A character string. The column that is represents ensembl gene id |
action |
A character string. Whether to join the new information to the input tbl (add), or just get the non-redundant tbl with the new information (get). |
This is useful since different resources use ensembl IDs while others use gene symbol IDs. At the moment this work for human (genes and transcripts) and mouse (genes) data.
A 'tbl' object including additional columns for transcript symbol
A 'tbl' object including additional columns for transcript symbol
A 'tbl' object including additional columns for transcript symbol
A 'tbl' object including additional columns for transcript symbol
ensembl_to_symbol(tidybulk::counts_ensembl, ens)