sb_corr {structToolbox} | R Documentation |
Signal/batch correction using SMCBMS package
sb_corr( order_col, batch_col, qc_col, smooth = 0, use_log = TRUE, min_qc = 4, qc_label = "QC", ... )
order_col |
The sample-meta column containing the order of measurement. |
batch_col |
The sample_meta column containing the batch labels. |
qc_col |
The sample_meta column containing QC labels. |
smooth |
Spline smoothing parameter. Should be in the range 0 to 1. If set to 0 it will be estimated using leave-one-out cross-validation. |
use_log |
Perform the signal correction fit on the log scaled data. Default is TRUE. |
min_qc |
Minimum number of measured quality control (QC) samples required for signal correction within feature per batch. Default 4. |
qc_label |
The label used in |
... |
additional slots and values passed to struct_class |
struct object
M = sb_corr(order_col='run_order',batch_col='batch_no',qc_col='class')