SignetList-class {signet} | R Documentation |
An S4 class to represent a list of "Signet" objects.
## S4 method for signature 'SignetList' initialize(.Object, list) ## S4 method for signature 'SignetList' x[[i]] ## S4 method for signature 'SignetList,ANY,missing' x[i, j, ..., drop = TRUE] ## S4 method for signature 'SignetList' summary(object, ...)
.Object |
A SignetList object. |
list |
A list of Signet objects. |
x |
A SignetList object. |
i |
Index specifying elements to extract or replace. |
j |
Unused for SignetList objects. |
... |
Unused for SignetList objects. |
drop |
Unused for SignetList objects. |
object |
A SignetList object. |
Results of the simulated annealing run for a lisst of pathways.
A SignetList object.
A data frame containing summary statistics for each element (network and subnetwork sizes, subnetwork score, p-value, significant genes list)
initialize
: Initialize a SignetList
[[
: Access the ith element (signet object) of the
SignetList
[
: Access the ith element (signet object) of the
SignetList
summary
: Summarize the SignetList.
results
A list of Signet objects.