sesamize {sesame} | R Documentation |
"fix" an RGChannelSet (for which IDATs may be unavailable) with Sesame The input is an RGSet and the output is a sesamized minfi::GenomicRatioSet
sesamize(rgSet, naFrac = 1, BPPARAM = SerialParam(), HDF5 = NULL)
rgSet |
an RGChannelSet, perhaps with colData of various flavors |
naFrac |
maximum NA fraction for a probe before it gets dropped (1) |
BPPARAM |
get parallel with MulticoreParam(n) |
HDF5 |
is the rgSet HDF5-backed? if so, avoid eating RAM (perhaps) |
a sesamized GenomicRatioSet