sesamize {sesame}R Documentation

"fix" an RGChannelSet (for which IDATs may be unavailable) with Sesame The input is an RGSet and the output is a sesamized minfi::GenomicRatioSet

Description

"fix" an RGChannelSet (for which IDATs may be unavailable) with Sesame The input is an RGSet and the output is a sesamized minfi::GenomicRatioSet

Usage

sesamize(rgSet, naFrac = 1, BPPARAM = SerialParam(), HDF5 = NULL)

Arguments

rgSet

an RGChannelSet, perhaps with colData of various flavors

naFrac

maximum NA fraction for a probe before it gets dropped (1)

BPPARAM

get parallel with MulticoreParam(n)

HDF5

is the rgSet HDF5-backed? if so, avoid eating RAM (perhaps)

Value

a sesamized GenomicRatioSet


[Package sesame version 1.6.0 Index]