seqdiff {seqcombo} | R Documentation |
calculate difference of two aligned sequences
seqdiff(fasta, reference = 1)
fasta |
fasta file |
reference |
which sequence serve as reference, 1 or 2 |
SeqDiff object
guangchuang yu
fas <- list.files(system.file("examples","GVariation", package="seqcombo"), pattern="fas", full.names=TRUE) seqdiff(fas[1], reference=1)