getFittedTable {SQUADD} | R Documentation |
This method creates a table containing the interpolated/fitted value of the simulation curve at the user-defined time point. Each column represents the condition and each line, the component node. It is used as basis for the Correlation Circle and the Prediction Map.
getFittedTable(object)
object |
Object of the Class |
This method firstly interpolate the SQUAD Simulation curve with a global (linear) or local (lowess) interpolation. A local interpolation is more sensitive to change in the curve when applying perturbation or pulse.
returns a matrix of size length of component x length of conditions.
Martial Sankar
(1) Cleveland, W. S. (1979) Robust locally weighted regression and smoothing scatterplots. J. Amer. Statist. Assoc. 74, 829:836. (2) Chambers, J. M. (1992) Linear models. Chapter 4 of Statistical Models in S eds J. M. Chambers and T. J. Hastie, Wadsworth And Brooks/Cole.
More specific information in getFittedTable-methods
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For more informations about the input object see SquadSimResServiceImpl-class
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fpath <- system.file("extdata", package="SQUADD") fileModel <- file.path(fpath,"data_IAA") nm <- c("ARF(a)", "ARF(i)", "AR_Genes", "Aux/IAA", "BES1/BZR1", "BIN2", "BR", "BRI1-BAK1","BRR_Genes","BRX","BR_Biosynthesis","BZR1", "DO", "IAA", "IAA_Biosynthesis", "NGA1", "PIN", "SCFTir1", "StimAux", "StimBR") t <- 50 ## call constructor obj <- simResService( folder=fileModel, time=t, ncolor=5, legend=nm, indexDeno=1, method="lowess") ## Apply method tab <- getFittedTable(obj)