tabular_module {Mirsynergy} | R Documentation |
Generate tabulated module assignments and nodes for input to Cystoscape.
tabular_module(V, W, H, outdir)
V |
Output from |
W |
An N by M edge weight matrix containing interaction strength between N mRNA and M miRNA. |
H |
An N by N edge weight matrix containing the binary interaction among the N mRNA (genes). |
outdir |
Path to save the nodes and edges files. |
nodes |
data.frame containing edges in each indexed module. Each edge (row) contain the edge weights, the edge type (MMI or GGI), and which module they belong to. |
edges |
data.frame containing nodes in each indexed module. Each node (row) contain the node name, type (mRNA/miRNA), and which module they belong to. |
Yue Li
load(system.file("extdata/toy_modules.RData", package="Mirsynergy")) tabular_module(V,W,H)