deepblue_enrich_regions_go_terms {DeepBlueR} | R Documentation |
Enrich the regions based on Gene Ontology terms.
deepblue_enrich_regions_go_terms(query_id = NULL, gene_model = NULL, user_key = deepblue_options("user_key"))
query_id |
- A string (Query ID) |
gene_model |
- A string (the gene model) |
user_key |
- A string (users token key) |
request_id - A string (Request ID - Use it to retrieve the result with info() and get_request_data(). The result is a list containing the GO terms that overlap with the query_id regions.)
Other Enrich the genome regions: deepblue_enrich_regions_fast
,
deepblue_enrich_regions_overlap
data_id = deepblue_select_experiments( experiment_name="E002-H3K9ac.narrowPeak.bed") filtered_id = deepblue_filter_regions(query_id = data_id, field = "VALUE", operation = ">", value = "100", type = "number", user_key = "anonymous_key") deepblue_enrich_regions_go_terms(query_id = filtered_id, gene_model = "gencode v23")