plotAllCNVs {CNVfilteR} | R Documentation |
Plots all CNVs on chromosome ideograms
plotAllCNVs(cnvs.gr)
cnvs.gr |
|
Plots all CNVs defined at cnvs.gr
on a view of horizontal ideograms representing all chromosomes.
invisibly returns a karyoplot
object
cnvs.file <- system.file("extdata", "DECoN.CNVcalls.2.csv", package = "CNVfilteR", mustWork = TRUE) cnvs.gr <- loadCNVcalls(cnvs.file = cnvs.file, chr.column = "Chromosome", start.column = "Start", end.column = "End", cnv.column = "CNV.type", sample.column = "Sample") # Plot all CNVs plotAllCNVs(cnvs.gr)