pathwayMeasures {CHRONOS}R Documentation

Pathway structural and functional aspects

Description

Pathway structural and functional aspects

Usage

pathwayMeasures(graphs)

Arguments

graphs

Pathway graphs as returned from createPathwayGraphs.

Details

Structural and functional aspects of a pathway are calculated in respect to all organism pathways.

Value

Matrix with pathness, betweeness centrality and degree values for each gene in the pathway graphs at it's columns.

Examples


# Load pathway graphs from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))

# Calculate pathway structural and functional aspects
measures <- pathwayMeasures(graphs)


[Package CHRONOS version 1.16.0 Index]