### R code from vignette source 'flowFitExampleData.Rnw' ################################################### ### code chunk number 1: flowFitExampleData.Rnw:31-32 ################################################### options(width=70) ################################################### ### code chunk number 2: Loading ################################################### library(flowFitExampleData) data(PKH26data) PKH26data data(QuahAndParish) QuahAndParish ################################################### ### code chunk number 3: flowFitExampleData.Rnw:68-85 (eval = FALSE) ################################################### ## ## require(flowCore) ## ## flowData <- read.flowSet(path = ".", phenoData = "annotationfig2.txt", transformation=FALSE) ## ## wf <- workFlow(flowData, name = "FACSCANTO LOG workflow") ## ## trunTrans <- truncateTransform(transformationId="truncate", a=1) ## tr <- transformList(c("","", "", "", "", "", ""), trunTrans, transformationId = "truncate") ## add(wf,tr) ## ## logTrans <- logTransform(transformationId="log10-transformation", logbase=10, r=1, d=1) ## tf <- transformList(c("","", "", "", "", "", ""), logTrans, transformationId = "log") ## add(wf, tf, parent="truncate") ## ## mDataLog <- Data(wf[["log"]]) ##