DOI: 10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TxDb.Hsapiens.UCSC.hg19.knownGene.

Annotation package for TxDb object(s)

Bioconductor version: 3.10

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews AnnotationData, Genetics, Homo_sapiens, TxDb
Version 3.2.2
License Artistic-2.0
Depends GenomicFeatures(>= 1.21.30)
Imports AnnotationDbi
Depends On Me annotation, chimera, FDb.InfiniumMethylation.hg19, FunciSNP, Homo.sapiens, variants, vulcan
Imports Me ALPS, appreci8R, ChIPQC, ChIPseeker, decompTumor2Sig, HiLDA, profileplyr, RareVariantVis, rCGH
Suggests Me AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase, BSgenome.Hsapiens.UCSC.hg19, bumphunter, cgdv17, chipenrich.data, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek, derfinder, derfinderPlot, esATAC, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, gQTLstats, groHMM, GUIDEseq, HTSeqGenie, InPAS, karyoploteR, MAST, methyAnalysis, MutationalPatterns, OUTRIDER, PureCN, R3CPET, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SplicingGraphs, SummarizedExperiment, TCGAutils, TFEA.ChIP, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering
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Source Package TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
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