## ---- echo=FALSE, message=FALSE-------------------------------------------- library(knitr) require(knitcitations) # cleanbib() # options("citation_format" = "pandoc") bib <- read.bibtex("bibliography.bib") # Can also write math expressions, e.g. # $Y = X\beta + \epsilon$, footnotes^[A footnote here.] # > "He who gives up [code] safety for [code] speed deserves neither." # ([via](https://twitter.com/hadleywickham/status/504368538874703872)) knitr::opts_chunk$set(fig.width=10, fig.height=10, message=FALSE, warning=FALSE) ## ----loading--------------------------------------------------------------- library(microbiome) ## ----atlasdata------------------------------------------------------------- # Data from # http://www.nature.com/ncomms/2014/140708/ncomms5344/full/ncomms5344.html data(atlas1006) atlas1006 ## ---- echo=FALSE,results="asis"-------------------------------------------- bibliography()