DOI: 10.18129/B9.bioc.clusterProfiler    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see clusterProfiler.

statistical analysis and visualization of functional profiles for genes and gene clusters

Bioconductor version: 3.10

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu [aut, cre, cph] , Li-Gen Wang [ctb], Giovanni Dall'Olio [ctb] (formula interface of compareCluster)

Maintainer: Guangchuang Yu <guangchuangyu at>

Citation (from within R, enter citation("clusterProfiler")):


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biocViews Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization
Version 3.14.3
In Bioconductor since BioC 2.8 (R-2.13) (9 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports AnnotationDbi, DOSE(>= 3.5.1), enrichplot(>= 0.99.7), ggplot2, GO.db, GOSemSim, magrittr, methods, plyr, qvalue, rvcheck, stats, tidyr, utils
Suggests AnnotationHub, dplyr, KEGG.db, knitr,, prettydoc, ReactomePA, testthat
Depends On Me maEndToEnd
Imports Me bioCancer, CEMiTool, DAPAR, debrowser, eegc, enrichTF, esATAC, fcoex, GDCRNATools, LINC, MAGeCKFlute, methylGSA, miRspongeR, MoonlightR, recountWorkflow, RNASeqR, signatureSearch, TCGAbiolinksGUI, TCGAWorkflow
Suggests Me ChIPseeker, cola, DOSE, enrichplot, epihet, GOSemSim, org.Mxanthus.db, ReactomePA, scGPS, TCGAbiolinks
Links To Me
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Source Package clusterProfiler_3.14.3.tar.gz
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Mac OS X 10.11 (El Capitan) clusterProfiler_3.14.3.tgz
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