SEtools

DOI: 10.18129/B9.bioc.SEtools    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see SEtools.

SEtools: tools for working with SummarizedExperiment

Bioconductor version: 3.10

This includes a set of tools for working with the SummarizedExperiment class, including handy merging and plotting functions.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SEtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEtools")

 

HTML	R Script	SEtools
PDF		Reference Manual

Details

biocViews	DataRepresentation, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.10 (R-3.6) (< 6 months)
License	GPL
Depends	R (>= 3.6)
Imports	SummarizedExperiment, data.table, pheatmap, seriation, ComplexHeatmap, circlize, methods
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, ggplot2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SEtools_1.0.0.tar.gz
Windows Binary	SEtools_1.0.0.zip
Mac OS X 10.11 (El Capitan)	SEtools_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SEtools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SEtools
Package Short Url	https://bioconductor.org/packages/SEtools/
Package Downloads Report	Download Stats