PICS

DOI: 10.18129/B9.bioc.PICS    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq

Bioconductor version: 3.10

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

 

PDF R Script The PICS users guide
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Clustering, Sequencing, Software, Visualization
Version 2.30.0
In Bioconductor since BioC 2.6 (R-2.11) (10 years)
License Artistic-2.0
Depends R (>= 2.14.0), BiocGenerics(>= 0.1.3)
Imports methods, stats4, IRanges, GenomicRanges, graphics, grDevices, stats, Rsamtools, GenomicAlignments, S4Vectors
LinkingTo
Suggests ShortRead, rtracklayer, parallel
SystemRequirements GSL (GNU Scientific Library)
Enhances
URL
Depends On Me
Imports Me PING
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PICS_2.30.0.tar.gz
Windows Binary PICS_2.30.0.zip
Mac OS X 10.11 (El Capitan) PICS_2.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS
Package Short Url https://bioconductor.org/packages/PICS/
Package Downloads Report Download Stats

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