DOI: 10.18129/B9.bioc.ADAM    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ADAM.

ADAM: Activity and Diversity Analysis Module

Bioconductor version: 3.10

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

Author: André Luiz Molan <andre.molan at>, Giordano Bruno Sanches Seco <giordano.bruno at>, Agnes Alessandra Sekijima Takeda <agnes.takeda at>, Jose Luiz Rybarczyk Filho <jose.luiz at>

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at>

Citation (from within R, enter citation("ADAM")):


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if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews GeneSetEnrichment, KEGG, Pathways, Software
Version 1.2.0
In Bioconductor since BioC 3.9 (R-3.6) (1 year)
License GPL (>= 2)
Depends R (>= 3.5), stats, utils, methods
Imports Rcpp (>= 0.12.18), GO.db(>= 3.6.0), KEGGREST(>= 1.20.2), knitr, pbapply (>= 1.3-4), dplyr (>= 0.7.6), DT (>= 0.4), stringr (>= 1.3.1), SummarizedExperiment(>= 1.10.1)
LinkingTo Rcpp
Suggests testthat
SystemRequirements C++11
Depends On Me ADAMgui
Imports Me
Suggests Me
Links To Me
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Source Package ADAM_1.2.0.tar.gz
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