as.ExpressionSet {readat} | R Documentation |
Converts objects into ExpressionSet
or MSnSet
instances.
as.ExpressionSet(x, log2Transform = TRUE, ...) ## S3 method for class 'WideSomaLogicData' as.ExpressionSet(x, log2Transform = TRUE, ...) soma2eset(somaObj, log2Transform = TRUE) ## S3 method for class 'WideSomaLogicData' as.MSnSet(x, log2Transform = FALSE, ...) as.MSnSet(x, log2Transform = FALSE, ...)
x |
An object to transform. Currently only |
log2Transform |
whether to log2 transform intensities or not |
... |
Passed between methods. |
somaObj |
A |
ExpressionSet or MSnSet object
Aditya Bhagwat
somaFile <- extractSampleData() wideSomaData <- readAdat(somaFile) as.ExpressionSet(wideSomaData) if(requireNamespace("MSnbase")) { as.MSnSet(wideSomaData) } unlink(somaFile)