plot_ora {fcoex}R Documentation

ORA visualization

Description

Creates a bar plot with the results of module overrepresentation analysis

Usage

plot_ora(fc, n = 10, pv_cut = 0.05, ...)

## S4 method for signature 'fcoex'
plot_ora(fc, n = 10, pv_cut = 0.05, ...)

Arguments

fc

Object of class fcoex.

n

number of enrichments to show

pv_cut

p-value significance cutoff. Default is 0.05.

...

parameters to plot_ora_single

Value

Object of class fcoex with ORA plots

Examples

data("fc")
gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
gmt_in <- pathwayPCA::read_gmt(gmt_fname)
fc <- mod_ora(fc, gmt_in)
fc <- plot_ora(fc)

[Package fcoex version 1.0.0 Index]