plot_ora {fcoex} | R Documentation |
Creates a bar plot with the results of module overrepresentation analysis
plot_ora(fc, n = 10, pv_cut = 0.05, ...) ## S4 method for signature 'fcoex' plot_ora(fc, n = 10, pv_cut = 0.05, ...)
fc |
Object of class |
n |
number of enrichments to show |
pv_cut |
p-value significance cutoff. Default is 0.05. |
... |
parameters to plot_ora_single |
Object of class fcoex
with ORA plots
data("fc") gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool") gmt_in <- pathwayPCA::read_gmt(gmt_fname) fc <- mod_ora(fc, gmt_in) fc <- plot_ora(fc)