determineTypeNumBasesAndTrDir {decompTumor2Sig} | R Documentation |
For a given signature or genome representation: determine the type (Shiraishi or Alexandrov), the number of bases, and whether transcription-strand information is included.
determineTypeNumBasesAndTrDir(mutData)
mutData |
The mutation frequency data of the signature or genome. |
A list object composed of: "type"=type of signature or genome; "numBases"=number of bases of the sequence patterns; and "trDir"=logical value indicating whether transcription-strand information has been considered in the mutation frequency data.
Rosario M. Piro
Freie Universitaet Berlin
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <r.piro@fu-berlin.de>
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2018) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics (accepted for
publication).
Krueger, Piro (2017) Identification of Mutational Signatures Active in
Individual Tumors. NETTAB 2017 - Methods, Tools & Platforms for
Personalized Medicine in the Big Data Era, October 16-18, 2017, Palermo,
Italy. PeerJ Preprints 5:e3257v1, 2017.