actino {clst} | R Documentation |
Square matrices decsribing pairwise distances among 16s rRNA sequences.
data(actino)
List of 5 $ dmat1 : num [1:146, 1:146] 0 0.763 1.25 10.345 12.771 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:146] "200" "201" "202" "203" ... .. ..$ : chr [1:146] "200" "201" "202" "203" ... $ dmat2 : num [1:146, 1:146] 0 0.574 1.044 5.669 8.409 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:146] "200" "201" "202" "203" ... .. ..$ : chr [1:146] "200" "201" "202" "203" ... $ dmat3 : num [1:146, 1:146] 0 0.763 1.25 8.571 11.233 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:146] "200" "201" "202" "203" ... .. ..$ : chr [1:146] "200" "201" "202" "203" ... $ taxa : Factor w/ 33 levels "Actinomyces bowdenii",..: 12 12 12 23 20 20 8 22 12 20 ... $ abbrev: Factor w/ 33 levels "A bowdenii","A canis",..: 12 12 12 23 20 20 8 22 12 20 ...
The matrices $dmat1
, dmat2
, and dmat3
contain
percent nucleotide difference with indels penalized heavily, little, and
somewhat, respectively.
$taxa
is a factor of species names; abbreviations of the same
names are found in $abbrev
.
data(actino)