visualizeArea {OmicsLonDA} | R Documentation |
Visualize significant time interval
visualizeArea(omicslonda_object = NULL, fit.method = "ssgaussian", text = "FeatureName", unit = "days", ylabel = "Normalized Count", col = c("blue", "firebrick"), prefix = "Test")
omicslonda_object |
The returned object from omicslonda analysis |
fit.method |
Fitting method (ssgaussian) |
text |
Feature name |
unit |
time unit used in the Time vector (hours, days, weeks, months, etc.) |
ylabel |
text to be shown on the y-axis of all generated figures (default: "Normalized Count") |
col |
two color to be used for the two groups (eg., c("red", "blue")). |
prefix |
prefix to be used to create directory for the analysis results |
null
Ahmed Metwally (ametwall@stanford.edu)
library(SummarizedExperiment) data(omicslonda_data_example) visualizeArea(omicslonda_object = omicslonda_data_example$omicslonda_results, fit.method = "ssgaussian", text = "Feature_1", unit = "days", ylabel = "Normalized Count", col = c("blue", "firebrick"), prefix = tempfile())