plot_192_profile {MutationalPatterns} | R Documentation |
Plot relative contribution of 192 trinucleotides
plot_192_profile(mut_matrix, colors, ymax = 0.2, condensed = FALSE)
mut_matrix |
192 trinucleotide profile matrix |
colors |
6 value color vector |
ymax |
Y axis maximum value, default = 0.2 |
condensed |
More condensed plotting format. Default = F. |
192 trinucleotide profile plot
mut_matrix_stranded
,
extract_signatures
## See the 'mut_matrix_stranded()' example for how we obtained the ## mutation matrix with transcriptional strand information: mut_mat_s <- readRDS(system.file("states/mut_mat_s_data.rds", package="MutationalPatterns")) ## Extract the signatures. ## This is a computationally intensive task, so we load a precomputed ## version instead. # nmf_res_strand <- extract_signatures(mut_mat_s, rank = 2) nmf_res_strand <- readRDS(system.file("states/nmf_res_strand_data.rds", package="MutationalPatterns")) ## Optionally, provide signature names colnames(nmf_res_strand$signatures) <- c("Signature A", "Signature B") ## Generate the plot plot_192_profile(nmf_res_strand$signatures)