mutation_types {MutationalPatterns}R Documentation

This function has been renamed. Use 'mut_type' instead.

Description

This function has been renamed. Use 'mut_type' instead.

Usage

mutation_types(vcf)

Arguments

vcf

A GRanges object.

Value

Character vector with base substitution types

See Also

read_vcfs_as_granges mut_type

Examples

## See the 'read_vcfs_as_granges()' example for how we obtained the
## following data:
vcfs <- readRDS(system.file("states/read_vcfs_as_granges_output.rds",
                package="MutationalPatterns"))

mut_type(vcfs[[1]])


[Package MutationalPatterns version 1.12.0 Index]