getCompoundGroups.IdMapDiffCounts {IdMappingAnalysis} | R Documentation |
Get counts for each compound event in IdMapDiffCounts. Used internally within IdMapDiffCounts$plot().
## S3 method for class 'IdMapDiffCounts' getCompoundGroups(this, verbose=FALSE, ...)
verbose |
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Not used |
A list of data frames corresponding to a particular compaund event ('excess both', 'excess left' etc.) where each data frame has the same structure as a data frame within the IdMapDiffCounts object.
Alex Lisovich, Roger Day
For more information see IdMapDiffCounts
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#create IdMapDiffCounts object IDs<-IdMapBase$primaryIDs(examples$msmsExperimentSet); jointIdMap<-JointIdMap(examples$identDfList,primaryIDs=IDs); diffs<-jointIdMap$getDiff("NetAffx_F","DAVID_Q",verbose=TRUE); diffCounts<-IdMapDiffCounts(diffs); # get compound events groups<-diffCounts$getCompoundGroups(); names(groups); groups$excess.both[1:10,]; groups$same.list[1:10,];